Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1112628 chr8:58028976 A/G 4.98E-6 498 31.15 38.77 36.93 KM Plot
THCA rs111278264 chr10:104895297 C/T 7.08E-14 502 31.32 35.33 32.1 KM Plot
THCA rs111283456 chr3:122411761 T/C 1.38E-7 497 32.03 24.47 18.38 KM Plot
THCA rs111371985 chr19:9808208 A/AT 4.5E-6 501 31.4 33.62 32.9 KM Plot
THCA rs111392848 chr19:9886927 G/A 4.81E-6 498 31.45 33.22 32.9 KM Plot
THCA rs111487590 chr19:9886762 G/A 4.81E-6 498 31.45 33.22 32.9 KM Plot
THCA rs111495554 chr19:9843159 A/G 4.85E-6 498 31.47 32.9 32.9 KM Plot
THCA rs111595478 chr10:104721721 CTT/C 2.84E-9 502 31.03 34.83 29.58 KM Plot
THCA rs111638521 chr10:104658172 G/A 2.71E-9 503 31.03 35.33 29.58 KM Plot
THCA rs1116748 chr3:139275442 T/C 7.11E-15 491 31.47 35.27 17.77 KM Plot
THCA rs111679420 chr8:144568825 G/A 6.19E-7 492 31.7 30.92 21.93 KM Plot
THCA rs111716607 chr19:9887011 T/TA 4.81E-6 498 31.45 33.22 32.9 KM Plot
THCA rs111719330 chr7:44004712 C/T 3.42E-9 496 31.15 33.27 33.7 KM Plot
THCA rs111760882 chr18:13822489 T/TGCTTGCAGG 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs111845861 chr2:238392665 C/T 0 498 31.43 33.97 39.2 KM Plot